CRISPRone

CRISPRone report for GCA_001373675.1_236_Rw196_contigs_500

♦ Seq 1: CTDE01000029.1 Pseudomonas aeruginosa genome assembly 236_Rw196_contgs_500, contig NODE_36_length_48217_cov_30.3933_ID_71, whole genome shotgun sequence

⇒Summary: seq-len = 48217 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36534-47219 bp Zoom in on locus 1 x13 x22 CRISPR array Location: 36534-37282 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 36534-37282 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 37531-38094 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38098-39126 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39137-40120 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40107-41411 bp Gene: COG1203:cas3 Type: Type-I Location: 41469-44699 bp Gene: cd09718:cas1 Type: universal Location: 44696-45670 bp CRISPR array Location: 45931-47219 bp Num of repeats: 22 Spacers: s13-s33 CRISPR array Location: 45931-47219 bp Num of repeats: 22 Spacers: s13-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36534-37282 bp]: array | spacers
           [Locus range 45931-47219 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)