CRISPRone

CRISPRone report for GCA_001373715.1_238_2_5Pc_2_contigs_500

♦ Seq 1: CTDG01000077.1 Pseudomonas aeruginosa genome assembly 238_2_5Pc_2_contgs_500, contig NODE_28_length_68534_cov_22.344_ID_55, whole genome shotgun sequence

⇒Summary: seq-len = 68534 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21316-32001 bp Zoom in on locus 1 x22 x13 CRISPR array Location: 21316-22605 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 21316-22605 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09718:cas1 Type: universal Location: 22865-23839 bp Gene: COG1203:cas3 Type: Type-I Location: 23836-27066 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27124-28428 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28415-29398 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29409-30437 bp Gene: cd09739:cas6f Type: other Location: 30441-31004 bp CRISPR array Location: 31254-32001 bp Num of repeats: 13 Spacers: s22-s33 CRISPR array Location: 31254-32001 bp Num of repeats: 13 Spacers: s22-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21316-22605 bp]: array | spacers
           [Locus range 31254-32001 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)