CRISPRone

CRISPRone report for GCA_001373855.1_245_Tsb_Pool_contigs_500

♦ Seq 1: CTDL01000004.1 Pseudomonas aeruginosa genome assembly 245_Tsb_Pool_contgs_500, contig NODE_38_length_48757_cov_29.8345_ID_75, whole genome shotgun sequence

⇒Summary: seq-len = 48757 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1539-12224 bp Zoom in on locus 1 x22 x13 CRISPR array Location: 1539-2828 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 1539-2828 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09718:cas1 Type: universal Location: 3088-4062 bp Gene: COG1203:cas3 Type: Type-I Location: 4059-7289 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7347-8651 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8638-9621 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9632-10660 bp Gene: cd09739:cas6f Type: other Location: 10664-11227 bp CRISPR array Location: 11477-12224 bp Num of repeats: 13 Spacers: s22-s33 CRISPR array Location: 11477-12224 bp Num of repeats: 13 Spacers: s22-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1539-2828 bp]: array | spacers
           [Locus range 11477-12224 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)