CRISPRone

CRISPRone report for GCA_001373895.1_247_Rw149_contigs_500

♦ Seq 1: CUXL01000039.1 Pseudomonas aeruginosa genome assembly 247_Rw149_contgs_500, contig NODE_34_length_48198_cov_19.1373_ID_67, whole genome shotgun sequence

⇒Summary: seq-len = 48198 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36380-47065 bp Zoom in on locus 1 x13 x22 CRISPR array Location: 36380-37128 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 36380-37128 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 37377-37940 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37944-38972 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38983-39966 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39953-41257 bp Gene: COG1203:cas3 Type: Type-I Location: 41315-44545 bp Gene: cd09718:cas1 Type: universal Location: 44542-45516 bp CRISPR array Location: 45777-47065 bp Num of repeats: 22 Spacers: s13-s33 CRISPR array Location: 45777-47065 bp Num of repeats: 22 Spacers: s13-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36380-37128 bp]: array | spacers
           [Locus range 45777-47065 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)