CRISPRone

CRISPRone report for GCA_001373955.1_249_Tsb_4_contigs_500

♦ Seq 1: CUXN01000010.1 Pseudomonas aeruginosa genome assembly 249_Tsb_4_contgs_500, contig NODE_37_length_48085_cov_16.7655_ID_73, whole genome shotgun sequence

⇒Summary: seq-len = 48085 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36381-47066 bp Zoom in on locus 1 x13 x22 CRISPR array Location: 36381-37129 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 36381-37129 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 37378-37941 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37945-38973 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38984-39967 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39954-41258 bp Gene: COG1203:cas3 Type: Type-I Location: 41316-44546 bp Gene: cd09718:cas1 Type: universal Location: 44543-45517 bp CRISPR array Location: 45778-47066 bp Num of repeats: 22 Spacers: s13-s33 CRISPR array Location: 45778-47066 bp Num of repeats: 22 Spacers: s13-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36381-37129 bp]: array | spacers
           [Locus range 45778-47066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)