CRISPRone

CRISPRone report for GCA_001374055.1_278_15_111A_contigs_500

♦ Seq 1: CUXV01000054.1 Pseudomonas aeruginosa genome assembly 278_15_111A_contgs_500, contig NODE_7_length_197952_cov_14.6823_ID_13, whole genome shotgun sequence

⇒Summary: seq-len = 197952 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5960-16592 bp Zoom in on locus 1 x6 x6 x11 CRISPR array Location: 5960-6294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5960-6294 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6388-6722 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 6388-6722 bp Num of repeats: 6 Spacers: s6-s10 Gene: cd09641:cas3HD Type: Type-I Location: 7494-10175 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 10178-11746 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 11743-12273 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 12283-13425 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 13427-14089 bp Gene: pfam08798:cas6e Type: other Location: 14064-14675 bp Gene: cd09719:cas1 Type: universal Location: 14702-14941 bp Gene: COG1518:cas1 Type: universal Location: 14990-15592 bp Gene: pfam09707:cas2 Type: universal Location: 15589-15888 bp CRISPR array Location: 15953-16592 bp Num of repeats: 11 Spacers: s11-s20 CRISPR array Location: 15953-16592 bp Num of repeats: 11 Spacers: s11-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5960-6294 bp]: array | spacers
           [Locus range 6388-6722 bp]: array | spacers
           [Locus range 15953-16592 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CUXV01000089.1 Pseudomonas aeruginosa genome assembly 278_15_111A_contgs_500, contig NODE_19_length_128305_cov_43.168_ID_37, whole genome shotgun sequence

⇒Summary: seq-len = 128305 bp; # of CRISPR array = 0; # of cas gene = 5  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45593-51065 bp Zoom in on locus 1 Gene: cd09708:DinG Type: Subtype-IV-A Location: 45593-47767 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 47856-48581 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 48610-49365 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 49365-50408 bp Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 50415-51065 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)