CRISPRone

CRISPRone report for GCA_001374195.1_286_2_5Pc_6_contigs_500

♦ Seq 1: CUYA01000041.1 Pseudomonas aeruginosa genome assembly 286_2_5Pc_6_contgs_500, contig NODE_21_length_93296_cov_23.4057_ID_41, whole genome shotgun sequence

⇒Summary: seq-len = 93296 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110-2238 bp Zoom in on locus 1 x36 CRISPR array Location: 110-2238 bp Num of repeats: 36 Spacers: s1-s35 CRISPR array Location: 110-2238 bp Num of repeats: 36 Spacers: s1-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110-2238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CUYA01000037.1 Pseudomonas aeruginosa genome assembly 286_2_5Pc_6_contgs_500, contig NODE_31_length_48527_cov_19.8355_ID_61, whole genome shotgun sequence

⇒Summary: seq-len = 48527 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160-11320 bp Zoom in on locus 1 x12 x32 CRISPR array Location: 160-849 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 160-849 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09718:cas1 Type: universal Location: 1110-2084 bp Gene: COG1203:cas3 Type: Type-I Location: 2081-5311 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5369-6673 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6660-7643 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7654-8682 bp Gene: cd09739:cas6f Type: other Location: 8686-9249 bp CRISPR array Location: 9432-11320 bp Num of repeats: 32 Spacers: s12-s42 CRISPR array Location: 9432-11320 bp Num of repeats: 32 Spacers: s12-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 160-849 bp]: array | spacers
           [Locus range 9432-11320 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CUYA01000024.1 Pseudomonas aeruginosa genome assembly 286_2_5Pc_6_contgs_500, contig NODE_4_length_453758_cov_22.6612_ID_7, whole genome shotgun sequence

⇒Summary: seq-len = 453758 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 425363-435434 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 425363-428542 bp Gene: unk Type: unknown Location: 428907-430241 bp Gene: pfam13280:WYL Type: other Location: 430370-431245 bp Gene: unk Type: unknown Location: 431383-432045 bp Gene: cd09639:cas3 Type: Type-I Location: 432309-435434 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)