CRISPRone

CRISPRone report for GCA_001374275.1_290_15_111B_contigs_500

♦ Seq 1: CUYC01000010.1 Pseudomonas aeruginosa genome assembly 290_15_111B_contgs_500, contig NODE_5_length_332164_cov_26.0648_ID_9, whole genome shotgun sequence

⇒Summary: seq-len = 332164 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 181357-192110 bp Zoom in on locus 1 x14 x6 x5 CRISPR array Location: 181357-182178 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 181357-182178 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 182243-182542 bp Gene: COG1518:cas1 Type: universal Location: 182539-183141 bp Gene: cd09719:cas1 Type: universal Location: 183190-183429 bp Gene: pfam08798:cas6e Type: other Location: 183456-183995 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 184042-184704 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 184706-185848 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 185858-186388 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 186385-187953 bp Gene: cd09641:cas3HD Type: Type-I Location: 187956-190637 bp CRISPR array Location: 191410-191743 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 191410-191743 bp Num of repeats: 6 Spacers: s14-s18 CRISPR array Location: 191838-192110 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 191838-192110 bp Num of repeats: 5 Spacers: s19-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 181357-182178 bp]: array | spacers
           [Locus range 191410-191743 bp]: array | spacers
           [Locus range 191838-192110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)