CRISPRone

CRISPRone report for GCA_001374315.1_292_15_321Ga_contigs_500

♦ Seq 1: CUYE01000023.1 Pseudomonas aeruginosa genome assembly 292_15_321Ga_contgs_500, contig NODE_24_length_69075_cov_25.8613_ID_47, whole genome shotgun sequence

⇒Summary: seq-len = 69075 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37315-47754 bp Zoom in on locus 1 x19 x13 CRISPR array Location: 37315-38423 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 37315-38423 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 38606-39169 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39173-40201 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40212-41195 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41182-42486 bp Gene: COG1203:cas3 Type: Type-I Location: 42544-45774 bp Gene: cd09718:cas1 Type: universal Location: 45771-46745 bp CRISPR array Location: 47006-47754 bp Num of repeats: 13 Spacers: s19-s30 CRISPR array Location: 47006-47754 bp Num of repeats: 13 Spacers: s19-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37315-38423 bp]: array | spacers
           [Locus range 47006-47754 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CUYE01000024.1 Pseudomonas aeruginosa genome assembly 292_15_321Ga_contgs_500, contig NODE_1_length_847683_cov_29.9675_ID_1, whole genome shotgun sequence

⇒Summary: seq-len = 847683 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 272793-283088 bp Zoom in on locus 1 x16 x12 CRISPR array Location: 272793-273736 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 272793-273736 bp Num of repeats: 16 Spacers: s1-s15 Gene: pfam09707:cas2 Type: universal Location: 273801-274100 bp Gene: cd09719:cas1 Type: universal Location: 274097-274408 bp Gene: pfam08798:cas6e Type: other Location: 274435-274974 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 275021-275683 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 275685-276827 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 276837-277367 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 277364-278932 bp Gene: cd09641:cas3HD Type: Type-I Location: 278935-281616 bp CRISPR array Location: 282389-283088 bp Num of repeats: 12 Spacers: s16-s26 CRISPR array Location: 282389-283088 bp Num of repeats: 12 Spacers: s16-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 272793-273736 bp]: array | spacers
           [Locus range 282389-283088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)