CRISPRone

CRISPRone report for GCA_001374395.1_296_Rw204_contigs_500

♦ Seq 1: CTFO01000078.1 Pseudomonas aeruginosa genome assembly 296_Rw204_contgs_500, contig NODE_35_length_47551_cov_25.3166_ID_69, whole genome shotgun sequence

⇒Summary: seq-len = 47551 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 285-10242 bp Zoom in on locus 1 x8 x16 CRISPR array Location: 285-733 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 285-733 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09718:cas1 Type: universal Location: 993-1967 bp Gene: COG1203:cas3 Type: Type-I Location: 1964-5194 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5252-6556 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6543-7526 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7537-8565 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 8569-9132 bp CRISPR array Location: 9316-10242 bp Num of repeats: 16 Spacers: s8-s22 CRISPR array Location: 9316-10242 bp Num of repeats: 16 Spacers: s8-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 285-733 bp]: array | spacers
           [Locus range 9316-10242 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CTFO01000050.1 Pseudomonas aeruginosa genome assembly 296_Rw204_contgs_500, contig NODE_18_length_128492_cov_27.2924_ID_35, whole genome shotgun sequence

⇒Summary: seq-len = 128492 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 127700-128207 bp Zoom in on locus 1 x9 CRISPR array Location: 127700-128207 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 127700-128207 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 127700-128207 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CTFO01000047.1 Pseudomonas aeruginosa genome assembly 296_Rw204_contgs_500, contig NODE_25_length_68394_cov_32.0188_ID_49, whole genome shotgun sequence

⇒Summary: seq-len = 68394 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26269-34935 bp Zoom in on locus 1 x14 Gene: cd09641:cas3HD Type: Type-I Location: 26269-28503 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 28554-29228 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 29225-30988 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 31000-31869 bp Gene: pfam01930:cas4 Type: Type-I Location: 31888-32520 bp Gene: cd09721:cas1 Type: universal Location: 32640-33563 bp Gene: cd09725:cas2 Type: universal Location: 33573-33863 bp CRISPR array Location: 34045-34935 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 34045-34935 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34045-34935 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)