CRISPRone

CRISPRone report for GCA_001374575.1_219_15_121A_contigs_500

♦ Seq 1: CUXC01000074.1 Pseudomonas aeruginosa genome assembly 219_15_121A_contgs_500, contig NODE_34_length_48171_cov_22.799_ID_67, whole genome shotgun sequence

⇒Summary: seq-len = 48171 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1020-11705 bp Zoom in on locus 1 x22 x13 CRISPR array Location: 1020-2309 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 1020-2309 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09718:cas1 Type: universal Location: 2569-3543 bp Gene: COG1203:cas3 Type: Type-I Location: 3540-6770 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6828-8132 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8119-9102 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9113-10141 bp Gene: cd09739:cas6f Type: other Location: 10145-10708 bp CRISPR array Location: 10958-11705 bp Num of repeats: 13 Spacers: s22-s33 CRISPR array Location: 10958-11705 bp Num of repeats: 13 Spacers: s22-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1020-2309 bp]: array | spacers
           [Locus range 10958-11705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)