CRISPRone

CRISPRone report for GCA_001374595.1_220_15_221Ga_contigs_500

♦ Seq 1: CTCT01000017.1 Pseudomonas aeruginosa genome assembly 220_15_221Ga_contgs_500, contig NODE_30_length_68467_cov_23.395_ID_59, whole genome shotgun sequence

⇒Summary: seq-len = 68467 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36467-47152 bp Zoom in on locus 1 x13 x22 CRISPR array Location: 36467-37215 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 36467-37215 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 37464-38027 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38031-39059 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39070-40053 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40040-41344 bp Gene: COG1203:cas3 Type: Type-I Location: 41402-44632 bp Gene: cd09718:cas1 Type: universal Location: 44629-45603 bp CRISPR array Location: 45864-47152 bp Num of repeats: 22 Spacers: s13-s33 CRISPR array Location: 45864-47152 bp Num of repeats: 22 Spacers: s13-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36467-37215 bp]: array | spacers
           [Locus range 45864-47152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)