CRISPRone

CRISPRone report for GCA_001374695.1_225_Tsb_2_contigs_500

♦ Seq 1: CTCX01000037.1 Pseudomonas aeruginosa genome assembly 225_Tsb_2_contgs_500, contig NODE_33_length_48086_cov_21.2572_ID_65, whole genome shotgun sequence

⇒Summary: seq-len = 48086 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36382-47067 bp Zoom in on locus 1 x13 x22 CRISPR array Location: 36382-37130 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 36382-37130 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09739:cas6f Type: other Location: 37379-37942 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37946-38974 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38985-39968 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39955-41259 bp Gene: COG1203:cas3 Type: Type-I Location: 41317-44547 bp Gene: cd09718:cas1 Type: universal Location: 44544-45518 bp CRISPR array Location: 45779-47067 bp Num of repeats: 22 Spacers: s13-s33 CRISPR array Location: 45779-47067 bp Num of repeats: 22 Spacers: s13-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36382-37130 bp]: array | spacers
           [Locus range 45779-47067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)