CRISPRone

CRISPRone report for GCA_001374895.1_253_12_5Pc_7_contigs_500

♦ Seq 1: CTDQ01000024.1 Pseudomonas aeruginosa genome assembly 253_12_5Pc_7_contgs_500, contig NODE_27_length_68136_cov_26.7318_ID_53, whole genome shotgun sequence

⇒Summary: seq-len = 68136 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20918-31603 bp Zoom in on locus 1 x22 x13 CRISPR array Location: 20918-22207 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 20918-22207 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09718:cas1 Type: universal Location: 22467-23441 bp Gene: COG1203:cas3 Type: Type-I Location: 23438-26668 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26726-28030 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28017-29000 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29011-30039 bp Gene: cd09739:cas6f Type: other Location: 30043-30606 bp CRISPR array Location: 30856-31603 bp Num of repeats: 13 Spacers: s22-s33 CRISPR array Location: 30856-31603 bp Num of repeats: 13 Spacers: s22-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20918-22207 bp]: array | spacers
           [Locus range 30856-31603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)