CRISPRone

CRISPRone report for GCA_001375275.1_274_2_5Pc_5_contigs_500

♦ Seq 1: CUXU01000016.1 Pseudomonas aeruginosa genome assembly 274_2_5Pc_5_contgs_500, contig NODE_29_length_72382_cov_22.7619_ID_57, whole genome shotgun sequence

⇒Summary: seq-len = 72382 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25405-35849 bp Zoom in on locus 1 x19 x12 CRISPR array Location: 25405-26513 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 25405-26513 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 26773-27747 bp Gene: COG1203:cas3 Type: Type-I Location: 27744-30974 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 31032-32336 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 32323-33306 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 33317-34345 bp Gene: cd09739:cas6f Type: other Location: 34349-34912 bp CRISPR array Location: 35162-35849 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 35162-35849 bp Num of repeats: 12 Spacers: s19-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25405-26513 bp]: array | spacers
           [Locus range 35162-35849 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)