CRISPRone

CRISPRone report for GCA_001420185.1_ASM142018v1

♦ Seq 1: LJNV01000076.1 Pseudomonas aeruginosa strain ATCC 33349 scaffold_75, whole genome shotgun sequence

⇒Summary: seq-len = 29294 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17541-21912 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 17541-18383 bp Gene: unk Type: unknown Location: 18661-18882 bp Gene: pfam13280:WYL Type: other Location: 19125-20141 bp Gene: mkCas0115:csx3 Type: other Location: 20200-21912 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LJNV01000038.1 Pseudomonas aeruginosa strain ATCC 33349 scaffold_37, whole genome shotgun sequence

⇒Summary: seq-len = 64847 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20872-31793 bp Zoom in on locus 1 x29 x11 CRISPR array Location: 20872-22582 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 20872-22582 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09718:cas1 Type: universal Location: 22842-23816 bp Gene: COG1203:cas3 Type: Type-I Location: 23813-27043 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27101-28405 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28392-29375 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29386-30414 bp Gene: cd09739:cas6f Type: other Location: 30418-30981 bp CRISPR array Location: 31166-31793 bp Num of repeats: 11 Spacers: s29-s38 CRISPR array Location: 31166-31793 bp Num of repeats: 11 Spacers: s29-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20872-22582 bp]: array | spacers
           [Locus range 31166-31793 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)