CRISPRone

CRISPRone report for GCA_001420205.1_ASM142020v1

♦ Seq 1: LJNW01000004.1 Pseudomonas aeruginosa strain ATCC 33350 scaffold_3, whole genome shotgun sequence

⇒Summary: seq-len = 396071 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16832-17460 bp Zoom in on locus 1 x11 CRISPR array Location: 16832-17460 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 16832-17460 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16832-17460 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LJNW01000039.1 Pseudomonas aeruginosa strain ATCC 33350 scaffold_38, whole genome shotgun sequence

⇒Summary: seq-len = 72027 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22068-33815 bp Zoom in on locus 1 x23 x25 CRISPR array Location: 22068-23417 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 22068-23417 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23677-24651 bp Gene: COG1203:cas3 Type: Type-I Location: 24648-27878 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28289-29590 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29577-30560 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30571-31599 bp Gene: cd09739:cas6f Type: other Location: 31603-32166 bp CRISPR array Location: 32351-33815 bp Num of repeats: 25 Spacers: s23-s46 CRISPR array Location: 32351-33815 bp Num of repeats: 25 Spacers: s23-s46 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22068-23417 bp]: array | spacers
           [Locus range 32351-33815 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)