CRISPRone

CRISPRone report for GCA_001420225.1_ASM142022v1

♦ Seq 1: LJNU01000052.1 Pseudomonas aeruginosa strain ATCC 33348 scaffold_51, whole genome shotgun sequence

⇒Summary: seq-len = 36681 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21854-33285 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 21854-23524 bp Gene: unk Type: unknown Location: 23697-23930 bp Gene: unk Type: unknown Location: 24045-24206 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 24465-24770 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 32983-33285 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LJNU01000083.1 Pseudomonas aeruginosa strain ATCC 33348 scaffold_82, whole genome shotgun sequence

⇒Summary: seq-len = 16826 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16004-16511 bp Zoom in on locus 1 x9 CRISPR array Location: 16004-16511 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 16004-16511 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16004-16511 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LJNU01000043.1 Pseudomonas aeruginosa strain ATCC 33348 scaffold_42, whole genome shotgun sequence

⇒Summary: seq-len = 44885 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 315-10873 bp Zoom in on locus 1 x11 x23 CRISPR array Location: 315-943 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 315-943 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09718:cas1 Type: universal Location: 1203-2177 bp Gene: COG1203:cas3 Type: Type-I Location: 2174-5404 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5462-6766 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6753-7736 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7747-8775 bp Gene: pfam09618:cas6f Type: Subtype-I-F Location: 8779-9342 bp CRISPR array Location: 9526-10873 bp Num of repeats: 23 Spacers: s11-s32 CRISPR array Location: 9526-10873 bp Num of repeats: 23 Spacers: s11-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 315-943 bp]: array | spacers
           [Locus range 9526-10873 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)