CRISPRone

CRISPRone report for GCA_001420525.1_ASM142052v1

♦ Seq 1: LKAF01000023.1 Pseudomonas aeruginosa strain Ps2 16934_8_83.3, whole genome shotgun sequence

⇒Summary: seq-len = 750636 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36379-46456 bp Zoom in on locus 1 x4 x22 CRISPR array Location: 36379-36587 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 36379-36587 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09739:cas6f Type: other Location: 36770-37333 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37337-38365 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38376-39359 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39346-40650 bp Gene: COG1203:cas3 Type: Type-I Location: 40708-43938 bp Gene: cd09718:cas1 Type: universal Location: 43935-44909 bp CRISPR array Location: 45170-46456 bp Num of repeats: 22 Spacers: s4-s24 CRISPR array Location: 45170-46456 bp Num of repeats: 22 Spacers: s4-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36379-36587 bp]: array | spacers
           [Locus range 45170-46456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LKAF01000012.1 Pseudomonas aeruginosa strain Ps2 16934_8_83.2, whole genome shotgun sequence

⇒Summary: seq-len = 828939 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110377-111606 bp Zoom in on locus 1 x21 CRISPR array Location: 110377-111606 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 110377-111606 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110377-111606 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)