CRISPRone

CRISPRone report for GCA_001444745.1_ASM144474v1

♦ Seq 1: LJZA01000248.1 Pseudomonas aeruginosa strain ATCC 33354 scaffold_46, whole genome shotgun sequence

⇒Summary: seq-len = 50431 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37248-50088 bp Zoom in on locus 1 x28 x44 CRISPR array Location: 37248-38897 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 37248-38897 bp Num of repeats: 28 Spacers: s1-s27 Gene: cd09739:cas6f Type: other Location: 39079-39642 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39646-40674 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40685-41668 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41655-42959 bp Gene: COG1203:cas3 Type: Type-I Location: 43017-46247 bp Gene: cd09718:cas1 Type: universal Location: 46244-47218 bp CRISPR array Location: 47480-50088 bp Num of repeats: 44 Spacers: s28-s70 CRISPR array Location: 47480-50088 bp Num of repeats: 44 Spacers: s28-s70 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37248-38897 bp]: array | spacers
           [Locus range 47480-50088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LJZA01000058.1 Pseudomonas aeruginosa strain ATCC 33354 scaffold_15, whole genome shotgun sequence

⇒Summary: seq-len = 122516 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 346-1935 bp Zoom in on locus 1 x27 CRISPR array Location: 346-1935 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 346-1935 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 346-1935 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)