CRISPRone

CRISPRone report for GCA_001444815.1_ASM144481v1

♦ Seq 1: LJZC01000121.1 Pseudomonas aeruginosa strain ATCC 33356 scaffold_70, whole genome shotgun sequence

⇒Summary: seq-len = 17250 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16875-17142 bp Zoom in on locus 1 x5 CRISPR array Location: 16875-17142 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 16875-17142 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16875-17142 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LJZC01000078.1 Pseudomonas aeruginosa strain ATCC 33356 scaffold_31, whole genome shotgun sequence

⇒Summary: seq-len = 68642 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21458-31226 bp Zoom in on locus 1 x9 x12 CRISPR array Location: 21458-21966 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 21458-21966 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09718:cas1 Type: universal Location: 22217-23191 bp Gene: COG1203:cas3 Type: Type-I Location: 23188-26418 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26476-27780 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27767-28750 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28761-29789 bp Gene: cd09739:cas6f Type: other Location: 29793-30356 bp CRISPR array Location: 30540-31226 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 30540-31226 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21458-21966 bp]: array | spacers
           [Locus range 30540-31226 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)