CRISPRone

CRISPRone report for GCA_001444835.1_ASM144483v1

♦ Seq 1: LJZD01000131.1 Pseudomonas aeruginosa strain ATCC 33357 scaffold_29, whole genome shotgun sequence

⇒Summary: seq-len = 68050 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21030-31474 bp Zoom in on locus 1 x19 x12 CRISPR array Location: 21030-22138 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 21030-22138 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09718:cas1 Type: universal Location: 22398-23372 bp Gene: COG1203:cas3 Type: Type-I Location: 23369-26599 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26657-27961 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27948-28931 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28942-29970 bp Gene: cd09739:cas6f Type: other Location: 29974-30537 bp CRISPR array Location: 30787-31474 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 30787-31474 bp Num of repeats: 12 Spacers: s19-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21030-22138 bp]: array | spacers
           [Locus range 30787-31474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)