CRISPRone

CRISPRone report for GCA_001444845.1_ASM144484v1

♦ Seq 1: LJZH01000301.1 Pseudomonas aeruginosa strain ATCC 33361 scaffold_85, whole genome shotgun sequence

⇒Summary: seq-len = 30012 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 716-1284 bp Zoom in on locus 1 x10 CRISPR array Location: 716-1284 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 716-1284 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 716-1284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LJZH01000083.1 Pseudomonas aeruginosa strain ATCC 33361 scaffold_172, whole genome shotgun sequence

⇒Summary: seq-len = 4462 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 245-693 bp Zoom in on locus 1 x8 CRISPR array Location: 245-693 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 245-693 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 245-693 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LJZH01000151.1 Pseudomonas aeruginosa strain ATCC 33361 scaffold_233, whole genome shotgun sequence

⇒Summary: seq-len = 1134 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 101-369 bp Zoom in on locus 1 x5 CRISPR array Location: 101-369 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 101-369 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 101-369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LJZH01000266.1 Pseudomonas aeruginosa strain ATCC 33361 scaffold_53, whole genome shotgun sequence

⇒Summary: seq-len = 38484 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8292-19660 bp Zoom in on locus 1 x20 x16 CRISPR array Location: 8292-9481 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 8292-9481 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09641:cas3HD Type: Type-I Location: 10255-12936 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12939-14507 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14504-15034 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15044-16186 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 16189-16851 bp Gene: pfam08798:cas6e Type: other Location: 16898-17437 bp Gene: cd09719:cas1 Type: universal Location: 17464-18354 bp Gene: pfam09707:cas2 Type: universal Location: 18351-18650 bp CRISPR array Location: 18715-19660 bp Num of repeats: 16 Spacers: s20-s34 CRISPR array Location: 18715-19660 bp Num of repeats: 16 Spacers: s20-s34 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8292-9481 bp]: array | spacers
           [Locus range 18715-19660 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: LJZH01000059.1 Pseudomonas aeruginosa strain ATCC 33361 scaffold_150, whole genome shotgun sequence

⇒Summary: seq-len = 6704 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112-379 bp Zoom in on locus 1 x5 CRISPR array Location: 112-379 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 112-379 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112-379 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: LJZH01000287.1 Pseudomonas aeruginosa strain ATCC 33361 scaffold_72, whole genome shotgun sequence

⇒Summary: seq-len = 28218 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27353-28100 bp Zoom in on locus 1 x13 CRISPR array Location: 27353-28100 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 27353-28100 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27353-28100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: LJZH01000044.1 Pseudomonas aeruginosa strain ATCC 33361 scaffold_137, whole genome shotgun sequence

⇒Summary: seq-len = 7935 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7754-7842 bp Zoom in on locus 1 x2 CRISPR array Location: 7754-7842 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 7754-7842 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7754-7842 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)