CRISPRone

CRISPRone report for GCA_001444865.1_ASM144486v1

♦ Seq 1: LJZI01000108.1 Pseudomonas aeruginosa strain ATCC 33362 scaffold_42, whole genome shotgun sequence

⇒Summary: seq-len = 47083 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8435-19314 bp Zoom in on locus 1 x9 x19 CRISPR array Location: 8435-8952 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 8435-8952 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09641:cas3HD Type: Type-I Location: 9727-12408 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12411-13979 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 13976-14506 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 14516-15658 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 15660-16322 bp Gene: pfam08798:cas6e Type: other Location: 16297-16908 bp Gene: cd09719:cas1 Type: universal Location: 16935-17825 bp Gene: pfam09707:cas2 Type: universal Location: 17822-18121 bp CRISPR array Location: 18186-19314 bp Num of repeats: 19 Spacers: s9-s26 CRISPR array Location: 18186-19314 bp Num of repeats: 19 Spacers: s9-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8435-8952 bp]: array | spacers
           [Locus range 18186-19314 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)