CRISPRone

CRISPRone report for GCA_001444995.1_ASM144499v1

♦ Seq 1: LJZG01000317.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_98, whole genome shotgun sequence

⇒Summary: seq-len = 30009 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28721-29288 bp Zoom in on locus 1 x10 CRISPR array Location: 28721-29288 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 28721-29288 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28721-29288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LJZG01000292.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_75, whole genome shotgun sequence

⇒Summary: seq-len = 28464 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27599-28346 bp Zoom in on locus 1 x13 CRISPR array Location: 27599-28346 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 27599-28346 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27599-28346 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LJZG01000052.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_144, whole genome shotgun sequence

⇒Summary: seq-len = 7943 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7762-7850 bp Zoom in on locus 1 x2 CRISPR array Location: 7762-7850 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 7762-7850 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7762-7850 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: LJZG01000084.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_173, whole genome shotgun sequence

⇒Summary: seq-len = 4445 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 245-693 bp Zoom in on locus 1 x8 CRISPR array Location: 245-693 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 245-693 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 245-693 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: LJZG01000151.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_233, whole genome shotgun sequence

⇒Summary: seq-len = 1132 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 101-369 bp Zoom in on locus 1 x5 CRISPR array Location: 101-369 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 101-369 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 101-369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: LJZG01000269.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_54, whole genome shotgun sequence

⇒Summary: seq-len = 38613 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8289-19657 bp Zoom in on locus 1 x20 x16 CRISPR array Location: 8289-9478 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 8289-9478 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09641:cas3HD Type: Type-I Location: 10252-12933 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 12936-14504 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 14501-15031 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 15041-16183 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 16186-16848 bp Gene: pfam08798:cas6e Type: other Location: 16895-17434 bp Gene: cd09719:cas1 Type: universal Location: 17461-18351 bp Gene: pfam09707:cas2 Type: universal Location: 18348-18647 bp CRISPR array Location: 18712-19657 bp Num of repeats: 16 Spacers: s20-s34 CRISPR array Location: 18712-19657 bp Num of repeats: 16 Spacers: s20-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8289-9478 bp]: array | spacers
           [Locus range 18712-19657 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: LJZG01000286.1 Pseudomonas aeruginosa strain ATCC 33360 scaffold_7, whole genome shotgun sequence

⇒Summary: seq-len = 122478 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112-379 bp Zoom in on locus 1 x5 CRISPR array Location: 112-379 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 112-379 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112-379 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)