CRISPRone

CRISPRone report for GCA_001447175.1_ASM144717v1

♦ Seq 1: CP013196.1 Clostridioides difficile strain Z31 chromosome, complete genome

⇒Summary: seq-len = 4298263 bp; # of CRISPR array = 9; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2056219-2056575 bp 2 Locus 2: 2129831-2137694 bp 3 Locus 3: 2299613-2300500 bp 4 Locus 4: 2599076-2600350 bp 5 Locus 5: 3097891-3098318 bp 6 Locus 6: 3208585-3209077 bp 7 Locus 7: 3299940-3305274 bp 8 Locus 8: 3480216-3481757 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x14 Zoom in on locus 4 x20 Zoom in on locus 5 x7 Zoom in on locus 6 x8 Zoom in on locus 7 x4 x13 x4 Zoom in on locus 8 x24 CRISPR array Location: 2056219-2056575 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2056219-2056575 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2129831-2130940 bp Gene: pfam01881:cas6 Type: other Location: 2131196-2131876 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2131939-2132904 bp Gene: unk Type: unknown Location: 2132966-2133412 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2133604-2134215 bp Gene: cd09693:cas5 Type: Type-I Location: 2134461-2134886 bp Gene: unk Type: unknown Location: 2134990-2135259 bp Gene: cd09641:cas3HD Type: Type-I Location: 2135286-2137694 bp CRISPR array Location: 2299613-2300500 bp Num of repeats: 14 Spacers: s6-s18 CRISPR array Location: 2299613-2300500 bp Num of repeats: 14 Spacers: s6-s18 CRISPR array Location: 2599076-2600350 bp Num of repeats: 20 Spacers: s19-s37 CRISPR array Location: 2599076-2600350 bp Num of repeats: 20 Spacers: s19-s37 CRISPR array Location: 3097891-3098318 bp Num of repeats: 7 Spacers: s38-s43 CRISPR array Location: 3097891-3098318 bp Num of repeats: 7 Spacers: s38-s43 CRISPR array Location: 3208585-3209077 bp Num of repeats: 8 Spacers: s44-s50 CRISPR array Location: 3208585-3209077 bp Num of repeats: 8 Spacers: s44-s50 CRISPR array Location: 3299940-3300166 bp Num of repeats: 4 Spacers: s51-s53 CRISPR array Location: 3299940-3300166 bp Num of repeats: 4 Spacers: s51-s53 CRISPR array Location: 3300767-3301587 bp Num of repeats: 13 Spacers: s54-s65 CRISPR array Location: 3300767-3301587 bp Num of repeats: 13 Spacers: s54-s65 CRISPR array Location: 3305049-3305274 bp Num of repeats: 4 Spacers: s66-s68 CRISPR array Location: 3305049-3305274 bp Num of repeats: 4 Spacers: s66-s68 CRISPR array Location: 3480216-3481757 bp Num of repeats: 24 Spacers: s69-s91 CRISPR array Location: 3480216-3481757 bp Num of repeats: 24 Spacers: s69-s91 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2056219-2056575 bp]: array | spacers
           [Locus range 2299613-2300500 bp]: array | spacers
           [Locus range 2599076-2600350 bp]: array | spacers
           [Locus range 3097891-3098318 bp]: array | spacers
           [Locus range 3208585-3209077 bp]: array | spacers
           [Locus range 3299940-3300166 bp]: array | spacers
           [Locus range 3300767-3301587 bp]: array | spacers
           [Locus range 3305049-3305274 bp]: array | spacers
           [Locus range 3480216-3481757 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)