CRISPRone

CRISPRone report for GCA_001447845.1_ASM144784v1

♦ Seq 1: CP013245.1 Pseudomonas aeruginosa strain VA-134, complete genome

⇒Summary: seq-len = 6400418 bp; # of CRISPR array = 3; # of cas gene = 13  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3469043-3477349 bp 2 Locus 2: 5802543-5812741 bp Zoom in on locus 1 x14 Zoom in on locus 2 x10 x18 Gene: COG1203:cas3 Type: Type-I Location: 3469043-3470917 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 3470968-3471642 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 3471639-3473402 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 3473414-3474283 bp Gene: pfam01930:cas4 Type: Type-I Location: 3474302-3474934 bp Gene: cd09721:cas1 Type: universal Location: 3475054-3475977 bp Gene: cd09725:cas2 Type: universal Location: 3475987-3476277 bp CRISPR array Location: 3476459-3477349 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 3476459-3477349 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 5802543-5803111 bp Num of repeats: 10 Spacers: s14-s22 CRISPR array Location: 5802543-5803111 bp Num of repeats: 10 Spacers: s14-s22 Gene: cd09718:cas1 Type: universal Location: 5803371-5804345 bp Gene: COG1203:cas3 Type: Type-I Location: 5804342-5807572 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5807630-5808934 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5808921-5809904 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 5809915-5810943 bp Gene: cd09739:cas6f Type: other Location: 5810947-5811510 bp CRISPR array Location: 5811695-5812741 bp Num of repeats: 18 Spacers: s23-s39 CRISPR array Location: 5811695-5812741 bp Num of repeats: 18 Spacers: s23-s39 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3476459-3477349 bp]: array | spacers
           [Locus range 5802543-5803111 bp]: array | spacers
           [Locus range 5811695-5812741 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)