CRISPRone

CRISPRone report for GCA_001449325.1_WH-SGI-V-07070

♦ Seq 1: LLLK01000002.1 Pseudomonas aeruginosa strain WH-SGI-V-07070 WH-SGI-V-07070_contig10, whole genome shotgun sequence

⇒Summary: seq-len = 325563 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201945-212394 bp Zoom in on locus 1 x12 x9 CRISPR array Location: 201945-202644 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 201945-202644 bp Num of repeats: 12 Spacers: s1-s11 Gene: pfam09707:cas2 Type: universal Location: 202709-203008 bp Gene: cd09719:cas1 Type: universal Location: 203005-203895 bp Gene: pfam08798:cas6e Type: other Location: 203922-204461 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 204508-205170 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 205172-206314 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 206324-206854 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 206851-208419 bp Gene: cd09641:cas3HD Type: Type-I Location: 208422-211103 bp CRISPR array Location: 211878-212394 bp Num of repeats: 9 Spacers: s12-s19 CRISPR array Location: 211878-212394 bp Num of repeats: 9 Spacers: s12-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 201945-202644 bp]: array | spacers
           [Locus range 211878-212394 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)