CRISPRone

CRISPRone report for GCA_001449345.1_WH-SGI-V-07062

♦ Seq 1: LLLM01000017.1 Pseudomonas aeruginosa strain WH-SGI-V-07062 WH-SGI-V-07062_contig24, whole genome shotgun sequence

⇒Summary: seq-len = 69892 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36784-48968 bp Zoom in on locus 1 x18 x43 CRISPR array Location: 36784-37832 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 36784-37832 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 38015-38578 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38582-39610 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39621-40604 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40591-41895 bp Gene: COG1203:cas3 Type: Type-I Location: 41953-45183 bp Gene: cd09718:cas1 Type: universal Location: 45180-46154 bp CRISPR array Location: 46419-48968 bp Num of repeats: 43 Spacers: s18-s59 CRISPR array Location: 46419-48968 bp Num of repeats: 43 Spacers: s18-s59 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36784-37832 bp]: array | spacers
           [Locus range 46419-48968 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)