CRISPRone

CRISPRone report for GCA_001449505.1_WH-SGI-V-07167

♦ Seq 1: LLLW01000014.1 Pseudomonas aeruginosa strain WH-SGI-V-07167 WH-SGI-V-07167_contig16, whole genome shotgun sequence

⇒Summary: seq-len = 152140 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99898-109759 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 99898-101508 bp Gene: pfam13280:WYL Type: other Location: 101669-102685 bp Gene: unk Type: unknown Location: 103649-103888 bp Gene: unk Type: unknown Location: 103957-104136 bp Gene: unk Type: unknown Location: 104446-104979 bp Gene: pfam13280:WYL Type: other Location: 104994-105869 bp Gene: unk Type: unknown Location: 106000-106287 bp Gene: unk Type: unknown Location: 106422-107000 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 107393-109759 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLLW01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07167 WH-SGI-V-07167_contig24, whole genome shotgun sequence

⇒Summary: seq-len = 69476 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21170-31839 bp Zoom in on locus 1 x21 x15 CRISPR array Location: 21170-22398 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 21170-22398 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09718:cas1 Type: universal Location: 22649-23623 bp Gene: COG1203:cas3 Type: Type-I Location: 23620-26850 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26908-28212 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28199-29182 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29193-30221 bp Gene: cd09739:cas6f Type: other Location: 30225-30788 bp CRISPR array Location: 30972-31839 bp Num of repeats: 15 Spacers: s21-s34 CRISPR array Location: 30972-31839 bp Num of repeats: 15 Spacers: s21-s34 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21170-22398 bp]: array | spacers
           [Locus range 30972-31839 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLLW01000018.1 Pseudomonas aeruginosa strain WH-SGI-V-07167 WH-SGI-V-07167_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 625189 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136877-137204 bp Zoom in on locus 1 x6 CRISPR array Location: 136877-137204 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 136877-137204 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 136877-137204 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)