CRISPRone

CRISPRone report for GCA_001449545.1_WH-SGI-V-07169

♦ Seq 1: LLLY01000013.1 Pseudomonas aeruginosa strain WH-SGI-V-07169 WH-SGI-V-07169_contig11, whole genome shotgun sequence

⇒Summary: seq-len = 180865 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162185-172819 bp Zoom in on locus 1 x12 x12 CRISPR array Location: 162185-162885 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 162185-162885 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 163659-166340 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 166343-167911 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 167908-168438 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 168448-169590 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 169592-170254 bp Gene: pfam08798:cas6e Type: other Location: 170229-170840 bp Gene: COG1518:cas1 Type: universal Location: 170867-171301 bp Gene: COG1518:cas1 Type: universal Location: 171308-171757 bp Gene: pfam09707:cas2 Type: universal Location: 171754-172053 bp CRISPR array Location: 172118-172819 bp Num of repeats: 12 Spacers: s12-s22 CRISPR array Location: 172118-172819 bp Num of repeats: 12 Spacers: s12-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 162185-162885 bp]: array | spacers
           [Locus range 172118-172819 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)