CRISPRone

CRISPRone report for GCA_001449655.1_WH-SGI-V-07178

♦ Seq 1: LLMH01000044.1 Pseudomonas aeruginosa strain WH-SGI-V-07178 WH-SGI-V-07178_contig29, whole genome shotgun sequence

⇒Summary: seq-len = 69873 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36882-47501 bp Zoom in on locus 1 x12 x23 CRISPR array Location: 36882-37570 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 36882-37570 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09739:cas6f Type: other Location: 37753-38316 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38320-39348 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39359-40342 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40329-41633 bp Gene: COG1203:cas3 Type: Type-I Location: 41691-44921 bp Gene: cd09718:cas1 Type: universal Location: 44918-45892 bp CRISPR array Location: 46154-47501 bp Num of repeats: 23 Spacers: s12-s33 CRISPR array Location: 46154-47501 bp Num of repeats: 23 Spacers: s12-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36882-37570 bp]: array | spacers
           [Locus range 46154-47501 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)