CRISPRone

CRISPRone report for GCA_001449725.1_WH-SGI-V-07181

♦ Seq 1: LLML01000103.1 Pseudomonas aeruginosa strain WH-SGI-V-07181 WH-SGI-V-07181_contig6, whole genome shotgun sequence

⇒Summary: seq-len = 283862 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113570-125608 bp Zoom in on locus 1 x18 x29 CRISPR array Location: 113570-114636 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 113570-114636 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09641:cas3HD Type: Type-I Location: 115410-118091 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 118094-119662 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 119659-120189 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 120199-121341 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 121343-122005 bp Gene: pfam08798:cas6e Type: other Location: 121980-122591 bp Gene: cd09719:cas1 Type: universal Location: 122618-123508 bp Gene: pfam09707:cas2 Type: universal Location: 123505-123804 bp CRISPR array Location: 123869-125608 bp Num of repeats: 29 Spacers: s18-s45 CRISPR array Location: 123869-125608 bp Num of repeats: 29 Spacers: s18-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113570-114636 bp]: array | spacers
           [Locus range 123869-125608 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)