CRISPRone

CRISPRone report for GCA_001449735.1_WH-SGI-V-07184

♦ Seq 1: LLMO01000020.1 Pseudomonas aeruginosa strain WH-SGI-V-07184 WH-SGI-V-07184_contig27, whole genome shotgun sequence

⇒Summary: seq-len = 48992 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38402-48537 bp Zoom in on locus 1 x15 x12 CRISPR array Location: 38402-39270 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 38402-39270 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 39453-40016 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40020-41048 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41059-42042 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42029-43333 bp Gene: COG1203:cas3 Type: Type-I Location: 43391-46621 bp Gene: cd09718:cas1 Type: universal Location: 46618-47592 bp CRISPR array Location: 47850-48537 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 47850-48537 bp Num of repeats: 12 Spacers: s15-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38402-39270 bp]: array | spacers
           [Locus range 47850-48537 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLMO01000056.1 Pseudomonas aeruginosa strain WH-SGI-V-07184 WH-SGI-V-07184_contig6, whole genome shotgun sequence

⇒Summary: seq-len = 409859 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 455-1203 bp Zoom in on locus 1 x13 CRISPR array Location: 455-1203 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 455-1203 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 455-1203 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)