CRISPRone

CRISPRone report for GCA_001449785.1_WH-SGI-V-07187

♦ Seq 1: LLMR01000065.1 Pseudomonas aeruginosa strain WH-SGI-V-07187 WH-SGI-V-07187_contig7, whole genome shotgun sequence

⇒Summary: seq-len = 416747 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 415044-415971 bp Zoom in on locus 1 x16 CRISPR array Location: 415044-415971 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 415044-415971 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 415044-415971 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLMR01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07187 WH-SGI-V-07187_contig1, whole genome shotgun sequence

⇒Summary: seq-len = 812423 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 612551-623370 bp Zoom in on locus 1 x12 x15 CRISPR array Location: 612551-613252 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 612551-613252 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 614027-616708 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 616711-618279 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 618276-618806 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 618816-619958 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 619960-620622 bp Gene: pfam08798:cas6e Type: other Location: 620597-621208 bp Gene: cd09719:cas1 Type: universal Location: 621235-622011 bp Gene: pfam09707:cas2 Type: universal Location: 622122-622421 bp CRISPR array Location: 622486-623370 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 622486-623370 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 612551-613252 bp]: array | spacers
           [Locus range 622486-623370 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLMR01000014.1 Pseudomonas aeruginosa strain WH-SGI-V-07187 WH-SGI-V-07187_contig21, whole genome shotgun sequence

⇒Summary: seq-len = 49094 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 895-11449 bp Zoom in on locus 1 x22 x12 CRISPR array Location: 895-2184 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 895-2184 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09718:cas1 Type: universal Location: 2444-3418 bp Gene: COG1203:cas3 Type: Type-I Location: 3415-6645 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6703-8007 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7994-8977 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8988-10016 bp Gene: cd09739:cas6f Type: other Location: 10020-10583 bp CRISPR array Location: 10767-11449 bp Num of repeats: 12 Spacers: s22-s32 CRISPR array Location: 10767-11449 bp Num of repeats: 12 Spacers: s22-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 895-2184 bp]: array | spacers
           [Locus range 10767-11449 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)