CRISPRone

CRISPRone report for GCA_001449805.1_WH-SGI-V-07188

♦ Seq 1: LLMS01000010.1 Pseudomonas aeruginosa strain WH-SGI-V-07188 WH-SGI-V-07188_contig18, whole genome shotgun sequence

⇒Summary: seq-len = 113675 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13532-25339 bp Zoom in on locus 1 x23 x26 CRISPR array Location: 13532-14881 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 13532-14881 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 15141-16115 bp Gene: COG1203:cas3 Type: Type-I Location: 16112-19342 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 19753-21054 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 21041-22024 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 22035-23063 bp Gene: cd09739:cas6f Type: other Location: 23067-23630 bp CRISPR array Location: 23815-25339 bp Num of repeats: 26 Spacers: s23-s47 CRISPR array Location: 23815-25339 bp Num of repeats: 26 Spacers: s23-s47 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 13532-14881 bp]: array | spacers
           [Locus range 23815-25339 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLMS01000034.1 Pseudomonas aeruginosa strain WH-SGI-V-07188 WH-SGI-V-07188_contig4, whole genome shotgun sequence

⇒Summary: seq-len = 494881 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 440633-441262 bp Zoom in on locus 1 x11 CRISPR array Location: 440633-441262 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 440633-441262 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 440633-441262 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)