CRISPRone

CRISPRone report for GCA_001449885.1_WH-SGI-V-07268

♦ Seq 1: LLMZ01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07228 WH-SGI-V-07228_contig3, whole genome shotgun sequence

⇒Summary: seq-len = 707301 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 496914-497722 bp Zoom in on locus 1 x14 CRISPR array Location: 496914-497722 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 496914-497722 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 496914-497722 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLMZ01000010.1 Pseudomonas aeruginosa strain WH-SGI-V-07228 WH-SGI-V-07228_contig18, whole genome shotgun sequence

⇒Summary: seq-len = 48944 bp; # of CRISPR array = 2; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38751-48712 bp Zoom in on locus 1 x8 x16 CRISPR array Location: 38751-39199 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 38751-39199 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 39383-39946 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39950-40603 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40632-40979 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40990-41973 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41960-43264 bp Gene: COG1203:cas3 Type: Type-I Location: 43322-46552 bp Gene: cd09718:cas1 Type: universal Location: 46549-47523 bp CRISPR array Location: 47785-48712 bp Num of repeats: 16 Spacers: s8-s22 CRISPR array Location: 47785-48712 bp Num of repeats: 16 Spacers: s8-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38751-39199 bp]: array | spacers
           [Locus range 47785-48712 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)