CRISPRone

CRISPRone report for GCA_001450065.1_WH-SGI-V-07243

♦ Seq 1: LLNO01000015.1 Pseudomonas aeruginosa strain WH-SGI-V-07243 WH-SGI-V-07243_contig22, whole genome shotgun sequence

⇒Summary: seq-len = 69286 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37389-48118 bp Zoom in on locus 1 x16 x21 CRISPR array Location: 37389-38317 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 37389-38317 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09739:cas6f Type: other Location: 38500-39063 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39067-40095 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40106-41089 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41076-42380 bp Gene: COG1203:cas3 Type: Type-I Location: 42438-45668 bp Gene: cd09718:cas1 Type: universal Location: 45665-46639 bp CRISPR array Location: 46891-48118 bp Num of repeats: 21 Spacers: s16-s35 CRISPR array Location: 46891-48118 bp Num of repeats: 21 Spacers: s16-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37389-38317 bp]: array | spacers
           [Locus range 46891-48118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLNO01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07243 WH-SGI-V-07243_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 598600 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91308-91635 bp Zoom in on locus 1 x6 CRISPR array Location: 91308-91635 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 91308-91635 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91308-91635 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)