CRISPRone

CRISPRone report for GCA_001450145.1_WH-SGI-V-07369

♦ Seq 1: LLNT01000101.1 Pseudomonas aeruginosa strain WH-SGI-V-07369 WH-SGI-V-07369_contig19, whole genome shotgun sequence

⇒Summary: seq-len = 121942 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103262-113896 bp Zoom in on locus 1 x12 x12 CRISPR array Location: 103262-103962 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 103262-103962 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 104736-107417 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 107420-108988 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 108985-109515 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 109525-110667 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 110669-111331 bp Gene: pfam08798:cas6e Type: other Location: 111306-111917 bp Gene: COG1518:cas1 Type: universal Location: 111944-112378 bp Gene: COG1518:cas1 Type: universal Location: 112385-112834 bp Gene: pfam09707:cas2 Type: universal Location: 112831-113130 bp CRISPR array Location: 113195-113896 bp Num of repeats: 12 Spacers: s12-s22 CRISPR array Location: 113195-113896 bp Num of repeats: 12 Spacers: s12-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 103262-103962 bp]: array | spacers
           [Locus range 113195-113896 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)