CRISPRone

CRISPRone report for GCA_001450165.1_WH-SGI-V-07370

♦ Seq 1: LLNU01000099.1 Pseudomonas aeruginosa strain WH-SGI-V-07370 WH-SGI-V-07370_contig30, whole genome shotgun sequence

⇒Summary: seq-len = 39614 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 266-533 bp Zoom in on locus 1 x5 CRISPR array Location: 266-533 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 266-533 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 266-533 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLNU01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07370 WH-SGI-V-07370_contig1, whole genome shotgun sequence

⇒Summary: seq-len = 888188 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118561-118889 bp Zoom in on locus 1 x6 CRISPR array Location: 118561-118889 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 118561-118889 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118561-118889 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLNU01000057.1 Pseudomonas aeruginosa strain WH-SGI-V-07370 WH-SGI-V-07370_contig15, whole genome shotgun sequence

⇒Summary: seq-len = 121414 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99355-107616 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 99355-100965 bp Gene: pfam13280:WYL Type: other Location: 101126-102142 bp Gene: COG2378:WYL Type: other Location: 102884-103726 bp Gene: unk Type: unknown Location: 103857-104144 bp Gene: unk Type: unknown Location: 104279-104857 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 105250-107616 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)