CRISPRone

CRISPRone report for GCA_001450225.1_WH-SGI-V-07375

♦ Seq 1: LLNZ01000023.1 Pseudomonas aeruginosa strain WH-SGI-V-07375 WH-SGI-V-07375_contig3, whole genome shotgun sequence

⇒Summary: seq-len = 628267 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 336253-348166 bp Zoom in on locus 1 x21 x24 CRISPR array Location: 336253-337503 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 336253-337503 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09641:cas3HD Type: Type-I Location: 338275-340956 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 340959-342527 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 342524-343054 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 343064-344206 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 344208-344870 bp Gene: pfam08798:cas6e Type: other Location: 344845-345456 bp Gene: cd09719:cas1 Type: universal Location: 345483-346373 bp Gene: pfam09707:cas2 Type: universal Location: 346370-346669 bp CRISPR array Location: 346734-348166 bp Num of repeats: 24 Spacers: s21-s43 CRISPR array Location: 346734-348166 bp Num of repeats: 24 Spacers: s21-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 336253-337503 bp]: array | spacers
           [Locus range 346734-348166 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)