CRISPRone

CRISPRone report for GCA_001450275.1_WH-SGI-V-07379

♦ Seq 1: LLOD01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07379 WH-SGI-V-07379_contig1, whole genome shotgun sequence

⇒Summary: seq-len = 834569 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 345140-345527 bp Zoom in on locus 1 x7 CRISPR array Location: 345140-345527 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 345140-345527 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 345140-345527 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLOD01000050.1 Pseudomonas aeruginosa strain WH-SGI-V-07379 WH-SGI-V-07379_contig25, whole genome shotgun sequence

⇒Summary: seq-len = 69663 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22148-32397 bp Zoom in on locus 1 x14 x15 CRISPR array Location: 22148-22956 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 22148-22956 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09718:cas1 Type: universal Location: 23207-24181 bp Gene: COG1203:cas3 Type: Type-I Location: 24178-27408 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27466-28770 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28757-29740 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29751-30779 bp Gene: cd09739:cas6f Type: other Location: 30783-31346 bp CRISPR array Location: 31530-32397 bp Num of repeats: 15 Spacers: s14-s27 CRISPR array Location: 31530-32397 bp Num of repeats: 15 Spacers: s14-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22148-22956 bp]: array | spacers
           [Locus range 31530-32397 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLOD01000041.1 Pseudomonas aeruginosa strain WH-SGI-V-07379 WH-SGI-V-07379_contig17, whole genome shotgun sequence

⇒Summary: seq-len = 151531 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99286-109148 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 99286-100896 bp Gene: pfam13280:WYL Type: other Location: 101057-102073 bp Gene: unk Type: unknown Location: 103037-103276 bp Gene: unk Type: unknown Location: 103345-103524 bp Gene: unk Type: unknown Location: 103835-104368 bp Gene: pfam13280:WYL Type: other Location: 104383-105258 bp Gene: unk Type: unknown Location: 105389-105676 bp Gene: unk Type: unknown Location: 105811-106389 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 106782-109148 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)