CRISPRone

CRISPRone report for GCA_001450325.1_WH-SGI-V-07056

♦ Seq 1: LLKW01000014.1 Pseudomonas aeruginosa strain WH-SGI-V-07056 WH-SGI-V-07056_contig21, whole genome shotgun sequence

⇒Summary: seq-len = 72333 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22106-33793 bp Zoom in on locus 1 x23 x24 CRISPR array Location: 22106-23455 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 22106-23455 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23715-24689 bp Gene: COG1203:cas3 Type: Type-I Location: 24686-27916 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28327-29628 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29615-30598 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30609-31637 bp Gene: cd09739:cas6f Type: other Location: 31641-32204 bp CRISPR array Location: 32389-33793 bp Num of repeats: 24 Spacers: s23-s45 CRISPR array Location: 32389-33793 bp Num of repeats: 24 Spacers: s23-s45 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22106-23455 bp]: array | spacers
           [Locus range 32389-33793 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLKW01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07056 WH-SGI-V-07056_contig1, whole genome shotgun sequence

⇒Summary: seq-len = 1039044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207448-208076 bp Zoom in on locus 1 x11 CRISPR array Location: 207448-208076 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 207448-208076 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207448-208076 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)