CRISPRone

CRISPRone report for GCA_001450425.1_WH-SGI-V-07054

♦ Seq 1: LLLI01000095.1 Pseudomonas aeruginosa strain WH-SGI-V-07054 WH-SGI-V-07054_contig8, whole genome shotgun sequence

⇒Summary: seq-len = 256110 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140994-151688 bp Zoom in on locus 1 x13 x12 CRISPR array Location: 140994-141755 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 140994-141755 bp Num of repeats: 13 Spacers: s1-s12 Gene: pfam09707:cas2 Type: universal Location: 141820-142119 bp Gene: COG1518:cas1 Type: universal Location: 142116-142565 bp Gene: COG1518:cas1 Type: universal Location: 142572-143006 bp Gene: pfam08798:cas6e Type: other Location: 143033-143572 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 143619-144281 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 144283-145425 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 145435-145965 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 145962-147530 bp Gene: cd09641:cas3HD Type: Type-I Location: 147533-150214 bp CRISPR array Location: 150989-151688 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 150989-151688 bp Num of repeats: 12 Spacers: s13-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 140994-141755 bp]: array | spacers
           [Locus range 150989-151688 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)