CRISPRone

CRISPRone report for GCA_001450485.1_WH-SGI-V-07059

♦ Seq 1: LLLS01000012.1 Pseudomonas aeruginosa strain WH-SGI-V-07059 WH-SGI-V-07059_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 446311 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 300106-311905 bp Zoom in on locus 1 x16 x27 CRISPR array Location: 300106-301052 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 300106-301052 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 301828-304509 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 304512-306080 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 306077-306607 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 306617-307759 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 307761-308423 bp Gene: pfam08798:cas6e Type: other Location: 308398-309009 bp Gene: cd09719:cas1 Type: universal Location: 309036-309926 bp Gene: pfam09707:cas2 Type: universal Location: 309923-310222 bp CRISPR array Location: 310287-311905 bp Num of repeats: 27 Spacers: s16-s41 CRISPR array Location: 310287-311905 bp Num of repeats: 27 Spacers: s16-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 300106-301052 bp]: array | spacers
           [Locus range 310287-311905 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)