CRISPRone

CRISPRone report for GCA_001450755.1_WH-SGI-V-07239

♦ Seq 1: LLNK01000056.1 Pseudomonas aeruginosa strain WH-SGI-V-07239 WH-SGI-V-07239_contig6, whole genome shotgun sequence

⇒Summary: seq-len = 271490 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63529-75751 bp Zoom in on locus 1 x16 x34 CRISPR array Location: 63529-64474 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 63529-64474 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09641:cas3HD Type: Type-I Location: 65248-67929 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 67932-69500 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 69497-70027 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 70037-71179 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 71181-71843 bp Gene: pfam08798:cas6e Type: other Location: 71818-72429 bp Gene: cd09719:cas1 Type: universal Location: 72456-73346 bp Gene: pfam09707:cas2 Type: universal Location: 73343-73642 bp CRISPR array Location: 73707-75751 bp Num of repeats: 34 Spacers: s16-s48 CRISPR array Location: 73707-75751 bp Num of repeats: 34 Spacers: s16-s48 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63529-64474 bp]: array | spacers
           [Locus range 73707-75751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)