CRISPRone

CRISPRone report for GCA_001450865.1_WH-SGI-V-07376

♦ Seq 1: LLOA01000017.1 Pseudomonas aeruginosa strain WH-SGI-V-07376 WH-SGI-V-07376_contig22, whole genome shotgun sequence

⇒Summary: seq-len = 97232 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 349-9650 bp Zoom in on locus 1 x16 Gene: cd09718:cas1 Type: universal Location: 349-1308 bp Gene: COG1203:cas3 Type: Type-I Location: 1305-4535 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4593-5897 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 5884-6867 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 6878-7906 bp Gene: cd09739:cas6f Type: other Location: 7910-8473 bp CRISPR array Location: 8723-9650 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 8723-9650 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8723-9650 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLOA01000033.1 Pseudomonas aeruginosa strain WH-SGI-V-07376 WH-SGI-V-07376_contig37, whole genome shotgun sequence

⇒Summary: seq-len = 21149 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 247-695 bp Zoom in on locus 1 x8 CRISPR array Location: 247-695 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 247-695 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 247-695 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)