CRISPRone

CRISPRone report for GCA_001450875.1_WH-SGI-V-07382

♦ Seq 1: LLOG01000031.1 Pseudomonas aeruginosa strain WH-SGI-V-07382 WH-SGI-V-07382_contig23, whole genome shotgun sequence

⇒Summary: seq-len = 49388 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 455-11054 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 455-1023 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 455-1023 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1274-2248 bp Gene: COG1203:cas3 Type: Type-I Location: 2245-5475 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5886-7187 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7174-8157 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8168-9196 bp Gene: cd09739:cas6f Type: other Location: 9200-9763 bp CRISPR array Location: 9947-11054 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 9947-11054 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 455-1023 bp]: array | spacers
           [Locus range 9947-11054 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLOG01000019.1 Pseudomonas aeruginosa strain WH-SGI-V-07382 WH-SGI-V-07382_contig12, whole genome shotgun sequence

⇒Summary: seq-len = 211818 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 457-1206 bp Zoom in on locus 1 x13 CRISPR array Location: 457-1206 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 457-1206 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 457-1206 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)