CRISPRone

CRISPRone report for GCA_001451175.1_WH-SGI-V-07413

♦ Seq 1: LLPA01000065.1 Pseudomonas aeruginosa strain WH-SGI-V-07413 WH-SGI-V-07413_contig7, whole genome shotgun sequence

⇒Summary: seq-len = 410821 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 409016-409943 bp Zoom in on locus 1 x16 CRISPR array Location: 409016-409943 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 409016-409943 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 409016-409943 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLPA01000014.1 Pseudomonas aeruginosa strain WH-SGI-V-07413 WH-SGI-V-07413_contig21, whole genome shotgun sequence

⇒Summary: seq-len = 49017 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 878-11372 bp Zoom in on locus 1 x21 x12 CRISPR array Location: 878-2107 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 878-2107 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09718:cas1 Type: universal Location: 2367-3341 bp Gene: COG1203:cas3 Type: Type-I Location: 3338-6568 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6626-7930 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7917-8900 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8911-9939 bp Gene: cd09739:cas6f Type: other Location: 9943-10506 bp CRISPR array Location: 10690-11372 bp Num of repeats: 12 Spacers: s21-s31 CRISPR array Location: 10690-11372 bp Num of repeats: 12 Spacers: s21-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 878-2107 bp]: array | spacers
           [Locus range 10690-11372 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLPA01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07413 WH-SGI-V-07413_contig1, whole genome shotgun sequence

⇒Summary: seq-len = 812392 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 612520-623339 bp Zoom in on locus 1 x12 x15 CRISPR array Location: 612520-613221 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 612520-613221 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 613996-616677 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 616680-618248 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 618245-618775 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 618785-619927 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 619929-620591 bp Gene: pfam08798:cas6e Type: other Location: 620566-621177 bp Gene: cd09719:cas1 Type: universal Location: 621204-621980 bp Gene: pfam09707:cas2 Type: universal Location: 622091-622390 bp CRISPR array Location: 622455-623339 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 622455-623339 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 612520-613221 bp]: array | spacers
           [Locus range 622455-623339 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)