CRISPRone

CRISPRone report for GCA_001451225.1_WH-SGI-V-07415

♦ Seq 1: LLPC01000035.1 Pseudomonas aeruginosa strain WH-SGI-V-07415 WH-SGI-V-07415_contig22, whole genome shotgun sequence

⇒Summary: seq-len = 69476 bp; # of CRISPR array = 2; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37638-48307 bp Zoom in on locus 1 x15 x21 CRISPR array Location: 37638-38506 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 37638-38506 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 38689-39252 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39256-39909 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39943-40284 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40295-41278 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41265-42569 bp Gene: COG1203:cas3 Type: Type-I Location: 42627-45857 bp Gene: cd09718:cas1 Type: universal Location: 45854-46828 bp CRISPR array Location: 47080-48307 bp Num of repeats: 21 Spacers: s15-s34 CRISPR array Location: 47080-48307 bp Num of repeats: 21 Spacers: s15-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37638-38506 bp]: array | spacers
           [Locus range 47080-48307 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: LLPC01000038.1 Pseudomonas aeruginosa strain WH-SGI-V-07415 WH-SGI-V-07415_contig25, whole genome shotgun sequence

⇒Summary: seq-len = 58971 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42382-52243 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 42382-44748 bp Gene: unk Type: unknown Location: 45141-45788 bp Gene: unk Type: unknown Location: 45854-46222 bp Gene: pfam13280:WYL Type: other Location: 46272-47147 bp Gene: unk Type: unknown Location: 47162-47695 bp Gene: unk Type: unknown Location: 48005-48184 bp Gene: unk Type: unknown Location: 48253-48492 bp Gene: pfam13280:WYL Type: other Location: 49456-50472 bp Gene: mkCas0115:csx3 Type: other Location: 50633-52243 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: LLPC01000032.1 Pseudomonas aeruginosa strain WH-SGI-V-07415 WH-SGI-V-07415_contig2, whole genome shotgun sequence

⇒Summary: seq-len = 625150 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 136874-137201 bp Zoom in on locus 1 x6 CRISPR array Location: 136874-137201 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 136874-137201 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 136874-137201 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)